Recent Publications from the Soltis Lab:

2024

• Editorial: Mapping microbial diversity onto the phylogeny of associated plant species
  Xiang, Q.-Y. (Jenny), S. N. Kivlin, D. E. Soltis, S. Yu, H. Chu, P. S. Soltis, and Y. Zhao. 2024. Editorial: Mapping microbial diversity onto the phylogeny of associated plant ...
• Genome-wide DNA methylation dynamics following recent polyploidy in the allotetraploid Tragopogon miscellus (Asteraceae)
  Shan, S., M. A. Gitzendanner, J. L. Boatwright, J. P. Spoelhof, C. L. Ethridge, L. Ji, X. Liu, P. S. Soltis, R. J. Schmitz, and D. E. Soltis. 2024. Genome-wide ...
• Building an inclusive botany: The “radicle” dream
  Mabry, M. E., N. Caomhanach, R. S. Abrahams, M. L. Gaynor, K. K. Pham, T. M. Williams, K. S. Murphy, V. B. Smocovitis, D. E. Soltis, and P. S. Soltis. ...
• Phylogenomics and the rise of the angiosperms
  Zuntini, A. R., T. Carruthers, O. Maurin, P. C. Bailey, K. Leempoel, G. E. Brewer, N. Epitawalage, E. Françoso, B. Gallego-Paramo, C. McGinnie, R. Negrão, S. R. Roy, L. Simpson, ...
• Efficient Gene Editing and Overexpression of Gametophyte Transformation in a Model Fern
  Jiang, W., F. Deng, M. Babla, C. Chen, D. Yang, T. Tong, Y. Qin, G. Chen, D. B. Marchant, P. S. Soltis, D. E. Soltis, F. Zeng, and Z.-H. Chen. ...
• Editorial: Mapping microbial diversity onto the phylogeny of associated plant species
  Xiang, Q.-Y. (Jenny), S. N. Kivlin, D. E. Soltis, S. Yu, H. Chu, P. S. Soltis, and Y. Zhao. 2024. Editorial: Mapping microbial diversity onto the phylogeny of associated plant ...
• Chromosome-level genome of putative autohexaploid Actinidia deliciosa provides insights into polyploidisation and evolution
  Liu, Y., Y. Zhou, F. Cheng, R. Zhou, Y. Yang, Y. Wang, X. Zhang, D. E. Soltis, N. Xiao, Z. Quan, and J. Li. 2024. Chromosome-level genome of putative autohexaploid ...
• Biodiversity and productivity in eastern US forests
  Liu, Y., J. A. Hogan, J. W. Lichstein, R. P. Guralnick, D. E. Soltis, P. S. Soltis, and S. M. Scheiner. 2024. Biodiversity and productivity in eastern US forests. Proceedings ...
• Geographic And Taxonomic Occurrence R-based Scrubbing (gatoRs): An R package and workflow for processing biodiversity data
  Patten, N. N., M. L. Gaynor, D. E. Soltis, and P. S. Soltis. 2024. Geographic And Taxonomic Occurrence R-based Scrubbing (gatoRs): An R package and workflow for processing biodiversity data. ...
• Genome assemblies of 11 bamboo species highlight diversification induced by dynamic subgenome dominance
  Ma, P.-F., Y.-L. Liu, C. Guo, G. Jin, Z.-H. Guo, L. Mao, Y.-Z. Yang, L.-Z. Niu, Y.-J. Wang, L. G. Clark, E. A. Kellogg, Z.-C. Xu, X.-Y. Ye, J.-X. Liu, ...
• Abundant incongruence in a clade endemic to a biodiversity hotspot: Phylogenetics of the scrub mint clade (Lamiaceae)
  Naranjo, A. A., C. E. Edwards, M. A. Gitzendanner, D. E. Soltis, and P. S. Soltis. 2024. Abundant incongruence in a clade endemic to a biodiversity hotspot: Phylogenetics of the ...
• Anatomy of a mega-radiation: Biogeography and niche evolution in Astragalus
  Folk, R. A., J. L. M. Charboneau, M. Belitz, T. Singh, H. R. Kates, D. E. Soltis, P. S. Soltis, R. P. Guralnick, and C. M. Siniscalchi. 2024. Anatomy of ...
• Repeated upslope biome shifts in Saxifraga during late-Cenozoic climate cooling
  Carruthers, T., M. S. Moerland, J. Ebersbach, A. Favre, R. A. Folk, J. A. Hawkins, A. N. Muellner-Riehl, M. Röser, D. E. Soltis, N. Tkach, W. J. Baker, J. M. ...
• Re-examining the placement of Hydrostachys using a large-scale phylogenetic approach
  Xu, Z., R. A. Folk, M. A. Gitzendanner, G.-W. Hu, P. S. Soltis, D. E. Soltis, and Q.-F. Wang. 2024. Re-examining the placement of Hydrostachys using a large-scale phylogenetic approach. ...
• Investigation of regulatory divergence between homoeologs in the recently formed allopolyploids, Tragopogon mirus and T. miscellus (Asteraceae)
  Yoo, M.-J., J. Koh, J. L. Boatwright, D. E. Soltis, P. S. Soltis, W. B. Barbazuk, and S. Chen. 2024. Investigation of regulatory divergence between homoeologs in the recently formed ...
• Rapid in situ diversification rates in Rhamnaceae explain the parallel evolution of high diversity in temperate biomes from global to local scales
  Tian, Q., G. W. Stull, J. Kellermann, D. Medan, F. J. Nge, S.-Y. Liu, H. R. Kates, D. E. Soltis, P. S. Soltis, R. P. Guralnick, R. A. Folk, R. ...
• nQuack: An R package for predicting ploidal level from sequence data using site-based heterozygosity
  Gaynor, M. L., J. B. Landis, T. K. O’Connor, R. G. Laport, J. J. Doyle, D. E. Soltis, J. M. Ponciano, and P. S. Soltis. 2024. nQuack: An R package ...
• Draft genome assemblies for two species of Escallonia (Escalloniales)
  Chanderbali, A. S., C. Dervinis, I. G. Anghel, D. E. Soltis, P. S. Soltis, and F. Zapata. 2024. Draft genome assemblies for two species of Escallonia (Escalloniales). BMC Genom Data ...

2023

• Chromosome-scale genome assembly of the ‘Munstead’ cultivar of Lavandula angustifolia
  Hamilton, J. P., B. Vaillancourt, J. C. Wood, H. Wang, J. Jiang, D. E. Soltis, C. R. Buell, and P. S. Soltis. 2023. Chromosome-scale genome assembly of the ‘Munstead’ cultivar ...
• Foliar endophyte diversity in Eastern Asian-Eastern North American disjunct tree species – influences of host identity, environment, phylogeny, and geographic isolation
  Zhou, W., W. Shi, P. S. Soltis, D. E. Soltis, and Q.-Y. (Jenny) Xiang. 2023. Foliar endophyte diversity in Eastern Asian-Eastern North American disjunct tree species – influences of host ...
• Quantifying error in occurrence data: Comparing the data quality of iNaturalist and digitized herbarium specimen data in flowering plant families of the southeastern United States
  White, E., P. S. Soltis, D. E. Soltis, and R. Guralnick. 2023. Quantifying error in occurrence data: Comparing the data quality of iNaturalist and digitized herbarium specimen data in flowering ...
• Parental genomic compatibility model: only certain diploid genotype combinations form allopolyploids
  Soltis, D. E., J. A. Tate, P. S. Soltis, and V. V. Symonds. 2023. Parental genomic compatibility model: only certain diploid genotype combinations form allopolyploids. Nucleus 66:371–378. https://doi.org/10.1007/s13237-023-00451-5 Abstract Allopolyploidy is a major ...
• Angiosperm phylogenetic diversity is lower in Africa than South America
  Qian, H., M. Kessler, J. Zhang, Y. Jin, D. E. Soltis, S. Qian, Y. Zhou, and P. S. Soltis. 2023. Angiosperm phylogenetic diversity is lower in Africa than South America. ...
• Niche unfilling dominates the naturalization of species from intercontinentally disjunct genera
  Liu, Y., J. M. Heberling, Z. Wang, D. E. Soltis, and P. S. Soltis. 2023. Niche unfilling dominates the naturalization of species from intercontinentally disjunct genera. Global Ecology and Biogeography ...
• Doubling down on polyploidy
  Spoelhof, J. P., P. S. Soltis, and D. E. Soltis. 2023. Doubling down on polyploidy. New Phytologist 240:909–911. https://doi.org/10.1111/nph.19223 Abstract This article is a Commentary on Halabi et al. (2023), 240: 918–927.
• Phylogenomic and syntenic data demonstrate complex evolutionary processes in early radiation of the rosids
  Liu, L., M. Chen, R. A. Folk, M. Wang, T. Zhao, F. Shang, D. E. Soltis, and P. Li. 2023. Phylogenomic and syntenic data demonstrate complex evolutionary processes in early ...
• Water stress modulates terpene biosynthesis and morphophysiology at different ploidal levels in Lippia alba (Mill.) N. E. Brown (Verbenaceae)
  Lopes, J. M. L., L. S. de Q. Nascimento, V. C. Souza, E. M. de Matos, E. A. Fortini, R. M. Grazul, M. O. Santos, D. E. Soltis, P. S. ...
• Building a feral future: Open questions in crop ferality
  Mabry, M. E., M. V. Bagavathiannan, J. M. Bullock, H. Wang, A. L. Caicedo, C. J. Dabney, E. B. M. Drummond, E. Frawley, J. Gressel, B. C. Husband, A. Lawton-Rauh, ...
• Phylogenomic analysis of the hemp family (Cannabaceae) reveals deep cyto-nuclear discordance and provides new insights into generic relationships
  Fu, X.-G., S.-Y. Liu, R. van Velzen, G. W. Stull, Q. Tian, Y.-X. Li, R. A. Folk, R. P. Guralnick, H. R. Kates, J.-J. Jin, Z.-H. Li, D. E. Soltis, ...
• Phylogenetic diversity and regionalization of root nodule symbiosis
  Folk, R. A., M. W. Belitz, C. M. Siniscalchi, H. R. Kates, D. E. Soltis, P. S. Soltis, R. P. Guralnick, and L. M. Borges. 2023. Phylogenetic diversity and regionalization ...
• Fagalean phylogeny in a nutshell: Chronicling the diversification history of Fagales
  Siniscalchi, C. M., J. Correa-Narvaez, H. R. Kates, D. E. Soltis, P. S. Soltis, R. P. Guralnick, S. R. Manchester, and R. A. Folk. 2023. Fagalean phylogeny in a nutshell: ...
• Rethinking the Ph.D. dissertation in botany: Widening the circle
  Soltis, D. E., V. B. Smocovitis, K. K. Pham, M. B. S. Cortez, A. L. Smith, and P. S. Soltis. 2023. Rethinking the Ph.D. dissertation in botany: Widening the circle. ...
• Towards a global perspective for Salvia L.: Phylogeny, diversification and floral evolution
  Moein, F., Z. Jamzad, M. Rahiminejad, J. B. Landis, M. Mirtadzadini, D. E. Soltis, and P. S. Soltis. 2023. Towards a global perspective for Salvia L.: Phylogeny, diversification and floral ...
• Dynamics of mixed-ploidy populations under demographic and environmental stochasticities
  Gaynor, M. L., N. Kortessis, D. E. Soltis, P. S. Soltis, and J. M. Ponciano. 2023. Dynamics of mixed-ploidy populations under demographic and environmental stochasticities. bioRxiv. https://doi.org/10.1101/2023.03.29.534764 Abstract The theoretical population dynamics of ...
• Developing a CRISPR System in Nongenetic Model Polyploids
  Shan, S., B. Yang, B. A. Hauser, P. S. Soltis, and D. E. Soltis. 2023. Developing a CRISPR System in Nongenetic Model Polyploids. Pp. 475–490 in Y. Van de Peer, ...
• An updated phylogeny, biogeography, and PhyloCode-based classification of Cornaceae based on three sets of genomic data
  Du, Z.-Y., Q.-Y. (Jenny) Xiang, J. Cheng, W. Zhou, Q.-F. Wang, D. E. Soltis, and P. S. Soltis. 2023. An updated phylogeny, biogeography, and PhyloCode-based classification of Cornaceae based on ...
• Ancestral area analyses reveal Pleistocene-influenced evolution in a clade of coastal plain endemic plants
  Naranjo, A. A., R. A. Folk, M. A. Gitzendanner, D. E. Soltis, and P. S. Soltis. 2023. Ancestral area analyses reveal Pleistocene-influenced evolution in a clade of coastal plain endemic ...
• Phylogenetic diversity of eastern Asia–eastern North America disjunct plants is mainly associated with divergence time
  Lin, H.-Y., M. Sun, Y.-J. Hao, D. Li, M. A. Gitzendanner, C.-X. Fu, D. E. Soltis, P. S. Soltis, and Y.-P. Zhao. 2023. Phylogenetic diversity of eastern Asia–eastern North America ...

2022

• Testing the evolutionary drivers of nitrogen-fixing symbioses in challenging soil environments
  Siniscalchi, C. M., H. R. Kates, P. S. Soltis, D. E. Soltis, R. P. Guralnick, and R. A. Folk. 2022. Testing the evolutionary drivers of nitrogen-fixing symbioses in challenging soil ...
• Hindcast-validated species distribution models reveal future vulnerabilities of mangroves and salt marsh species
  Hodel, R. G. J., D. E. Soltis, and P. S. Soltis. 2022. Hindcast-validated species distribution models reveal future vulnerabilities of mangroves and salt marsh species. Ecology and Evolution 12:e9252. https://doi.org/10.1002/ece3.9252 Abstract Rapid climate ...
• Dynamic genome evolution in a model fern
  Marchant, D. B., G. Chen, S. Cai, F. Chen, P. Schafran, J. Jenkins, S. Shu, C. Plott, J. Webber, J. T. Lovell, G. He, L. Sandor, M. Williams, S. Rajasekar, ...
• Biotic colonization of subtropical East Asian caves through time
  Li, X.-Q., X.-G. Xiang, F. Jabbour, O. Hagen, R. del C. Ortiz, P. S. Soltis, D. E. Soltis, and W. Wang. 2022. Biotic colonization of subtropical East Asian caves through ...
• Two shifts in evolutionary lability underlie independent gains and losses of root-nodule symbiosis in a single clade of plants
  Kates, H. R., B. C. O’Meara, R. LaFrance, G. W. Stull, E. K. James, D. Conde, S. Liu, Q. Tian, T. Yi, M. Kirst, J.-M. Ané, D. E. Soltis, R. ...
• Temporal and spatial comparisons of angiosperm diversity between eastern Asia and North America
  Hu, H., J. Ye, B. Liu, L. Mao, S. A. Smith, R. L. Barrett, P. S. Soltis, D. E. Soltis, Z. Chen, and L. Lu. 2022. Temporal and spatial comparisons ...
• Tragopogon dubius: Multiple introductions to North America and the formation of the New World tetraploids
  Soltis, D. E., E. V. Mavrodiev, M. A. Gitzendanner, Y. E. Alexeev, G. T. Godden, and P. S. Soltis. 2022. Tragopogon dubius: Multiple introductions to North America and the formation ...
• Evolution and Diversification Dynamics of Butterflies
  Kawahara, A. Y., C. Storer, A. P. S. Carvalho, D. M. Plotkin, F. Condamine, M. P. Braga, E. A. Ellis, R. A. S. Laurent, X. Li, V. Barve, L. Cai, ...
• Phylogenomic analysis of Tibouchina s.s. (Melastomataceae) highlights the evolutionary complexity of Neotropical savannas
  Jantzen, J. R., P. J. F. Guimarães, L. C. Pederneiras, A. L. F. Oliveira, D. E. Soltis, and P. S. Soltis. 2022. Phylogenomic analysis of Tibouchina s.s. (Melastomataceae) highlights the ...
• Climatic niche comparisons of eastern North American and eastern Asian disjunct plant genera
  Melton, A. E., M. H. Clinton, D. N. Wasoff, L. Lu, H. Hu, Z. Chen, K. Ma, D. E. Soltis, and P. S. Soltis. 2022. Climatic niche comparisons of eastern ...
• The Cycas genome and the early evolution of seed plants
  Liu, Y., S. Wang, L. Li, T. Yang, S. Dong, T. Wei, S. Wu, Y. Liu, Y. Gong, X. Feng, J. Ma, G. Chang, J. Huang, Y. Yang, H. Wang, ...
• Phylotranscriptomics of Theaceae: generic-level relationships, reticulation and whole-genome duplication
  Zhang, Q., L. Zhao, R. A. Folk, J.-L. Zhao, N. A. Zamora, S.-X. Yang, D. E. Soltis, P. S. Soltis, L.-M. Gao, H. Peng, and X.-Q. Yu. 2022. Phylotranscriptomics of ...
• A Night at the Museums
  Soltis, P., and D. Soltis. 2022. A Night at the Museums. Bulletin of the American Academy of Arts and Sciences 75:36–48. American Academy of Arts & Sciences. https://www.jstor.org/stable/27204558
• Buxus and Tetracentron genomes help resolve eudicot genome history
  Chanderbali, A. S., L. Jin, Q. Xu, Y. Zhang, J. Zhang, S. Jian, E. Carroll, D. Sankoff, V. A. Albert, D. G. Howarth, D. E. Soltis, and P. S. Soltis. ...
• Amborella gene presence/absence variation is associated with abiotic stress responses that may contribute to environmental adaptation
  Hu, H., A. Scheben, B. Verpaalen, S. Tirnaz, P. E. Bayer, R. G. J. Hodel, J. Batley, D. E. Soltis, P. S. Soltis, and D. Edwards. 2022. Amborella gene presence/absence ...
• Contrasting patterns of phylogenetic diversity and alpine specialization across the alpine flora of the American mountain range system
  Figueroa, H. F., H. E. Marx, M. B. de Souza Cortez, C. J. Grady, N. J. Engle-Wrye, J. Beach, A. Stewart, R. A. Folk, D. E. Soltis, P. S. Soltis, ...
• Genomes shed light on the evolution of Begonia, a mega-diverse genus
  Li, L., X. Chen, D. Fang, S. Dong, X. Guo, N. Li, L. Campos-Dominguez, W. Wang, Y. Liu, X. Lang, Y. Peng, D. Tian, D. C. Thomas, W. Mu, M. ...
• Endemism, projected climate change, and identifying species of critical concern in the Scrub Mint clade (Lamiaceae)
  Naranjo, A. A., A. E. Melton, D. E. Soltis, and P. S. Soltis. 2022. Endemism, projected climate change, and identifying species of critical concern in the Scrub Mint clade (Lamiaceae). ...
• Green plant genomes: What we know in an era of rapidly expanding opportunities
  Kress, W. J., D. E. Soltis, P. J. Kersey, J. L. Wegrzyn, J. H. Leebens-Mack, M. R. Gostel, X. Liu, and P. S. Soltis. 2022. Green plant genomes: What we ...
• Potential distributional shifts in North America of allelopathic invasive plant species under climate change models
  Wang, A., A. E. Melton, D. E. Soltis, and P. S. Soltis. 2022. Potential distributional shifts in North America of allelopathic invasive plant species under climate change models. Plant Diversity ...

2021

• Plastid phylogenomic insights into relationships of all flowering plant families
  Li, H.-T., Y. Luo, L. Gan, P.-F. Ma, L.-M. Gao, J.-B. Yang, J. Cai, M. A. Gitzendanner, P. W. Fritsch, T. Zhang, J.-J. Jin, C.-X. Zeng, H. Wang, W.-B. Yu, ...
• Insights into angiosperm evolution, floral development and chemical biosynthesis from the Aristolochia fimbriata genome
  Qin, L., Y. Hu, J. Wang, X. Wang, R. Zhao, H. Shan, K. Li, P. Xu, H. Wu, X. Yan, L. Liu, X. Yi, S. Wanke, J. E. Bowers, J. ...
• Soil pH determines bacterial distribution and assembly processes in natural mountain forests of eastern China
  Ni, Y., T. Yang, Y. Ma, K. Zhang, P. S. Soltis, D. E. Soltis, J. A. Gilbert, Y. Zhao, C. Fu, and H. Chu. 2021. Soil pH determines bacterial distribution ...
• Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms
  Stull, G. W., X.-J. Qu, C. Parins-Fukuchi, Y.-Y. Yang, J.-B. Yang, Z.-Y. Yang, Y. Hu, H. Ma, P. S. Soltis, D. E. Soltis, D.-Z. Li, S. A. Smith, and T.-S. ...
• Targeted Sequencing Suggests Wild-Crop Gene Flow Is Central to Different Genetic Consequences of Two Independent Pumpkin Domestications
  Kates, H. R., F. L. Anido, G. Sánchez-de la Vega, L. E. Eguiarte, P. S. Soltis, and D. E. Soltis. 2021. Targeted Sequencing Suggests Wild-Crop Gene Flow Is Central to ...
• Trajectories of Homoeolog-Specific Expression in Allotetraploid Tragopogon castellanus Populations of Independent Origins
  Boatwright, J. L., C.-T. Yeh, H.-C. Hu, A. Susanna, D. E. Soltis, P. S. Soltis, P. S. Schnable, and W. B. Barbazuk. 2021. Trajectories of Homoeolog-Specific Expression in Allotetraploid Tragopogon ...
• The Effects of Herbarium Specimen Characteristics on Short-Read NGS Sequencing Success in Nearly 8000 Specimens: Old, Degraded Samples Have Lower DNA Yields but Consistent Sequencing Success
  Kates, H. R., J. R. Doby, C. M. Siniscalchi, R. LaFrance, D. E. Soltis, P. S. Soltis, R. P. Guralnick, and R. A. Folk. 2021. The Effects of Herbarium Specimen ...
• Is the age of plant communities predicted by the age, stability and soil composition of the underlying landscapes? An investigation of OCBILs
  Beatriz, M., Folk, R. A., Grady, C. J., Spoelhof, J. P., Smith, S. A., Soltis, D. E., & Soltis, P. S. (2021). Is the age of plant communities predicted by ...
• Ancient seeds spill secrets about the evolution of flowering plants.
  Soltis, D. E. 2021. Ancient seeds spill secrets about the evolution of flowering plants. Nature, doi: 10.1038/d41586-021-01347-7. Nature Publishing Group. The origin and rapid diversification of flowering ...
• Evolution of rapid blue‐light response linked to explosive diversification of ferns in angiosperm forests.
  Cai, S., Y. Huang, F. Chen, X. Zhang, E. Sessa, C. Zhao, D. B. Marchant, D. Xue, G. Chen, F. Dai, J. H. Leebens‐Mack, G. Zhang, S. Shabala, J. M. ...
• Spatial phylogenetics of butterflies in relation to environmental drivers and angiosperm diversity across North America.
  Earl, C., M. W. Belitz, S. W. Laffan, V. Barve, N. Barve, D. E. Soltis, J. M. Allen, P. S. Soltis, B. D. Mishler, A. Y. Kawahara, and R. Guralnick. ...
• Biogeography and habitat evolution of Saxifragaceae, with a revision of generic limits and a new tribal system.
  Folk, R. A., R. L. Stubbs, N. J. Engle-Wrye, D. E. Soltis, and Y. Okuyama. 2021. Biogeography and habitat evolution of Saxifragaceae, with a revision of generic limits and a ...
• A new, simple, highly scalable, and efficient protocol for genomic DNA extraction from diverse plant taxa.
  Mavrodiev, E. V., C. Dervinis, W. M. Whitten, M. A. Gitzendanner, M. Kirst, S. Kim, T. J. Kinser, P. S. Soltis, and D. E. Soltis. 2021. A new, simple, highly ...
• Examination of Reticulate Evolution Involving Haageocereus and Espostoa.
  Arakaki, M., P. Speranza, P. S. Soltis, and D. E. Soltis. 2021. Examination of Reticulate Evolution Involving Haageocereus and Espostoa. Haseltonia 27. Abstract Intergeneric hybridization is not rare ...
• Green giant—a tiny chloroplast genome with mighty power to produce high-value proteins: history and phylogeny.
  Daniell, H., S. Jin, X.-G. Zhu, M. A. Gitzendanner, D. E. Soltis, and P. S. Soltis. 2021. Green giant—a tiny chloroplast genome with mighty power to produce high-value proteins: history ...
• High-throughput methods for efficiently building massive phylogenies from natural history collections.
  Folk, R. A., H. R. Kates, R. LaFrance, D. E. Soltis, P. S. Soltis, and R. P. Guralnick. 2021. High-throughput methods for efficiently building massive phylogenies from natural history collections. ...
• Polyploidy: an evolutionary and ecological force in stressful times.
  Van de Peer, Y., T.-L. Ashman, P. S. Soltis, and D. E. Soltis. 2021. Polyploidy: an evolutionary and ecological force in stressful times. The Plant Cell 33:11–26. [View on publisher’s ...
• Plant genomes: Markers of evolutionary history and drivers of evolutionary change.
  Soltis, P. S., and D. E. Soltis. 2021. Plant genomes: Markers of evolutionary history and drivers of evolutionary change. PLANTS, PEOPLE, PLANET 3:74–82. Societal Impact Statement Plant genomes ...

2020

• Progress Out of a Pandemic: Global collections, data sharing, and changing standards of practice.
  Paul, D., and P. Soltis. 2020. Progress Out of a Pandemic: Global collections, data sharing, and changing standards of practice. BISS 4:e59268. The COVID-19 pandemic has disrupted all aspects ...
• Plants meet machines: Prospects in machine learning for plant biology.
  Soltis, P. S., G. Nelson, A. Zare, and E. K. Meineke. 2020. Plants meet machines: Prospects in machine learning for plant biology. Appl Plant Sci 8.
• Integrating Biodiversity Infrastructure into Pathogen Discovery and Mitigation of Emerging Infectious Diseases.
  Cook, J. A., S. Arai, B. Armién, J. Bates, C. A. C. Bonilla, M. B. de S. Cortez, J. L. Dunnum, A. W. Ferguson, K. M. Johnson, F. A. A. ...
• Machine Learning Using Digitized Herbarium Specimens to Advance Phenological Research.
  Pearson, K. D., G. Nelson, M. F. J. Aronson, P. Bonnet, L. Brenskelle, C. C. Davis, E. G. Denny, E. R. Ellwood, H. Goëau, J. M. Heberling, A. Joly, T. ...
• Diversification in the Arctic: Biogeography and Systematics of the North American Micranthes (Saxifragaceae).
  Stubbs, R. L., R. A. Folk, D. E. Soltis, and N. Cellinese. 2020. Diversification in the Arctic: Biogeography and Systematics of the North American Micranthes (Saxifragaceae). Systematic Botany 45:802–811. [View ...
• Genetic insights into the evolution of genera with the eastern Asia–eastern North America floristic disjunction: a transcriptomics analysis.
  Melton, A. E., S. Chen, Y. Zhao, C. Fu, Q.-Y. (Jenny) Xiang, S. Cheng, G. K.-S. Wong, P. S. Soltis, D. E. Soltis, and M. A. Gitzendanner. 2020. Genetic insights ...
• Origin and evolution of a gibberellin‐deactivating enzyme GAMT.
  Zhang, C., M. Chaiprasongsuk, A. S. Chanderbali, X. Chen, J. Fu, D. E. Soltis, and F. Chen. 2020. Origin and evolution of a gibberellin‐deactivating enzyme GAMT. Plant Direct 4. [View ...
• Angiosperms at the edge: Extremity, diversity, and phylogeny.
  Folk, R. A., C. M. Siniscalchi, and D. E. Soltis. 2020. Angiosperms at the edge: Extremity, diversity, and phylogeny. Plant, Cell & Environment 43:2871–2893. Abstract A hallmark of ...
• Habitat Shape Affects Polyploid Establishment in a Spatial, Stochastic Model.
  Spoelhof, J. P., D. E. Soltis, and P. S. Soltis. 2020. Habitat Shape Affects Polyploid Establishment in a Spatial, Stochastic Model. Front. Plant Sci. 11. Frontiers. Polyploidy ...
• Is the age of plant communities predicted by the age, stability and soil composition of the underlying landscapes? An investigation of OCBILs.
  De Souza Cortez, M. B., R. A. Folk, C. J. Grady, J. P. Spoelhof, S. A. Smith, D. E. Soltis, and P. S. Soltis. 2020. Is the age of plant ...
• Noise does not equal bias in assessing the evolutionary history of the angiosperm flora of China: A response to Qian (2019).
  Lu, L.-M., H.-H. Hu, D.-X. Peng, B. Liu, J.-F. Ye, T. Yang, H.-L. Li, M. Sun, S. A. Smith, P. S. Soltis, D. E. Soltis, and Z.-D. Chen. 2020. Noise ...
• Generation of a chromosome-scale genome assembly of the insect-repellent terpenoid-producing Lamiaceae species, Callicarpa americana
  Hamilton, J. P., G. T. Godden, E. Lanier, W. W. Bhat, T. J. Kinser, B. Vaillancourt, H. Wang, J. C. Wood, J. Jiang, P. S. Soltis, D. E. Soltis, B. ...
• Biogeography and ecological niche evolution in Diapensiaceae inferred from phylogenetic analysis.
  Gaynor, M. L., C.-N. Fu, L.-M. Gao, L.-M. Lu, D. E. Soltis, and P. S. Soltis. 2020. Biogeography and ecological niche evolution in Diapensiaceae inferred from phylogenetic analysis. Journal of ...
• Transcriptome Dynamics of the Inflorescence in Reciprocally Formed Allopolyploid Tragopogon miscellus (Asteraceae)
  Shan, S., J. L. Boatwright, X. Liu, A. S. Chanderbali, C. Fu, P. S. Soltis, and D. E. Soltis. 2020. Transcriptome Dynamics of the Inflorescence in Reciprocally Formed Allopolyploid Tragopogon ...
• Polyploidy: A Biological Force From Cells to Ecosystems.
  Fox, D. T., D. E. Soltis, P. S. Soltis, T.-L. Ashman, and Y. Van de Peer. 2020. Polyploidy: A Biological Force From Cells to Ecosystems. Trends in Cell Biology 30:688–694. ...
• Recent accelerated diversification in rosids occurred outside the tropics.
  Sun, M., R. A. Folk, M. A. Gitzendanner, P. S. Soltis, Z. Chen, D. E. Soltis, and R. P. Guralnick. 2020. Recent accelerated diversification in rosids occurred outside the tropics. ...
• Informal multimedia biodiversity awareness event as a digital ecology for promoting culture of science.
  Valle, N., P. Antonenko, P. S. Soltis, D. E. Soltis, R. A. Folk, R. P. Guralnick, J. C. Oliverio, T. T. Difato, Z. Xu, and L. Cheng. 2020. Informal multimedia ...
• A two‐tier bioinformatic pipeline to develop probes for target capture of nuclear loci with applications in Melastomataceae.
  Jantzen, J. R., P. Amarasinghe, R. A. Folk, M. Reginato, F. A. Michelangeli, D. E. Soltis, N. Cellinese, and P. S. Soltis. 2020. A two‐tier bioinformatic pipeline to develop probes ...
• The evolutionary origins of the cat attractant nepetalactone in catnip.
  Lichman, B. R., G. T. Godden, J. P. Hamilton, L. Palmer, M. O. Kamileen, D. Zhao, B. Vaillancourt, J. C. Wood, M. Sun, T. J. Kinser, L. K. Henry, C. ...
• Sequencing and Analyzing the Transcriptomes of a Thousand Species Across the Tree of Life for Green Plants.
  Wong, G. K.-S., D. E. Soltis, J. Leebens-Mack, N. J. Wickett, M. S. Barker, Y. Van de Peer, S. W. Graham, and M. Melkonian. 2020. Sequencing and Analyzing the Transcriptomes ...
• Plastome Evolution in Saxifragaceae and Multiple Plastid Capture Events Involving Heuchera and Tiarella.
  Liu, L.-X., Y.-X. Du, R. A. Folk, S.-Y. Wang, D. E. Soltis, F.-D. Shang, and P. Li. 2020. Plastome Evolution in Saxifragaceae and Multiple Plastid Capture Events Involving Heuchera and ...
• Revisiting the phylogeny of Dipsacales: New insights from phylogenomic analyses of complete plastomic sequences
  Xiang, C.-L., H.-J. Dong, S. Landrein, F. Zhao, W.-B. Yu, D. E. Soltis, P. S. Soltis, A. Backlund, H.-F. Wang, D.-Z. Li, and H. Peng. 2020. Revisiting the phylogeny of ...
• Evolution of environmental stress responses in plants.
  Chen, Z.-H., and D. E. Soltis. 2020. Evolution of environmental stress responses in plants. Plant, Cell & Environment 43:2827–2831. Green plants (Viridiplantae) have been impacted by environmental ...
• Preparing for the Need for a Supply of Native Seed.
  Harrison, S. P., R. Schoen, D. Atcitty, R. Fiegener, R. Goodhue, K. Havens, C. C. House, R. C. Johnson, E. Leger, V. Lesser, J. Opsomer, N. Shaw, D. E. Soltis, ...
• Estimating rates and patterns of diversification with incomplete sampling: a case study in the rosids.
  Sun, M., R. A. Folk, M. A. Gitzendanner, P. S. Soltis, Z. Chen, D. E. Soltis, and R. P. Guralnick. 2020. Estimating rates and patterns of diversification with incomplete sampling: ...
• Nuclear phylogenomic analyses of asterids conflict with plastome trees and support novel relationships among major lineages
  Stull, G. W., P. S. Soltis, D. E. Soltis, M. A. Gitzendanner, and S. A. Smith. 2020. Nuclear phylogenomic analyses of asterids conflict with plastome trees and support novel relationships ...
• An assessment of the need for native seeds and the capacity for their supply: Interim report.
  Harrison, S. P., D. Atcitty, R. Fiegener, R. Goodhue, K. Havens, C. C. House, R. C. Johnson, E. Leger, V. Lesser, J. Opsomer, N. Shaw, D. E. Soltis, S. Swinton, ...
• Spatial Phylogenetics of the North American Flora
  Mishler, B. D., R. Guralnick, P. S. Soltis, S. A. Smith, D. E. Soltis, N. Barve, J. M. Allen, and S. W. Laffan. 2020. Spatial Phylogenetics of the North American ...
• Genetic relationships and polyploid origins in the Lippia alba complex
  Lopes, J. M. L., H. H. Carvalho, C. Zorzatto, A. L. S. Azevedo, M. A. Machado, F. R. G. Salimena, R. M. Grazul, M. A. Gitzendanner, D. E. Soltis, P. ...
• Informal multimedia biodiversity awareness event as a digital ecology for promoting culture of science
  Valle, N., P. Antonenko, P. S. Soltis, D. E. Soltis, R. A. Folk, R. P. Guralnick, J. C. Oliverio, T. T. Difato, Z. Xu, and L. Cheng. 2020. Informal multimedia ...
• Seed Funds Leverage External Awards for Research in Natural Resources and Agricultural Systems
  Davis, J. M., P. S. Soltis, D. C. Adams, S. L. Larkin, and R. A. Gilbert. 2020. Seed Funds Leverage External Awards for Research in Natural Resources and Agricultural Systems. ...
• A Phylogenomic Perspective on Evolution and Discordance in the Alpine-Arctic Plant Clade Micranthes (Saxifragaceae)
  Stubbs, R. L., R. A. Folk, C.-L. Xiang, S. Chen, D. E. Soltis, and N. Cellinese. 2020. A Phylogenomic Perspective on Evolution and Discordance in the Alpine-Arctic Plant Clade Micranthes ...
• Accelerated diversification correlated with functional traits shapes extant diversity of the early divergent angiosperm family Annonaceae
  Xue, B., X. Guo, J. B. Landis, M. Sun, C. C. Tang, P. S. Soltis, D. E. Soltis, and R. M. K. Saunders. 2020. Accelerated diversification correlated with functional traits ...
• Considerations in adapting CRISPR/Cas9 in nongenetic model plant systems
  Shan, S., P. S. Soltis, D. E. Soltis, and B. Yang. 2020. Considerations in adapting CRISPR/Cas9 in nongenetic model plant systems. Applications in Plant Sciences 8. Abstract The ...

2019

• Biodiversity Science and the Twenty-First Century Workforce
  Ellwood, E. R., J. A. Sessa, J. K. Abraham, A. E. Budden, N. Douglas, R. Guralnick, E. Krimmel, T. Langen, D. Linton, M. Phillips, P. S. Soltis, M. Studer, L. ...
• The C-Fern (Ceratopteris richardii) genome: insights into plant genome evolution with the first partial homosporous fern genome assembly
  Marchant, D. B., E. B. Sessa, P. G. Wolf, K. Heo, W. B. Barbazuk, P. S. Soltis, and D. E. Soltis. 2019. The C-Fern (Ceratopteris richardii) genome: insights into plant ...
• Predicting the Impact of Describing New Species on Phylogenetic Patterns
  Blackburn, D. C., G. Giribet, D. E. Soltis, and E. L. Stanley. 2019. Predicting the Impact of Describing New Species on Phylogenetic Patterns. Integr Org Biol, doi: 10.1093/iob/obz028. Abstract Although our inventory ...
• Phylotranscriptomic analyses reveal asymmetrical gene duplication dynamics and signatures of ancient polyploidy in mints
  Godden, G. T., T. J. Kinser, P. S. Soltis, and D. E. Soltis. 2019. Phylotranscriptomic analyses reveal asymmetrical gene duplication dynamics and signatures of ancient polyploidy in mints. Genome Biol ...
• Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP)
  Carpenter, E. J., N. Matasci, S. Ayyampalayam, S. Wu, J. Sun, J. Yu, F. R. Jimenez Vieira, C. Bowler, R. G. Dorrell, M. A. Gitzendanner, L. Li, W. Du, K. ...
• One thousand plant transcriptomes and the phylogenomics of green plants
  Leebens-Mack, J. H., M. S. Barker, E. J. Carpenter, M. K. Deyholos, M. A. Gitzendanner, and One Thousand Plant Transcriptomes Initiative. 2019. One thousand plant transcriptomes and the phylogenomics of green ...
• Effects of taxon sampling and tree reconstruction methods on phylodiversity metrics
  Jantzen, J. R., W. M. Whitten, K. M. Neubig, L. C. Majure, D. E. Soltis, and P. S. Soltis. 2019. Effects of taxon sampling and tree reconstruction methods on phylodiversity ...
• Natural selection and repeated patterns of molecular evolution following allopatric divergence
  Dong, Y., S. Chen, S. Cheng, W. Zhou, Q. Ma, Z. Chen, C.-X. Fu, X. Liu, Y. Zhao, P. S. Soltis, G. K.-S. Wong, D. E. Soltis, and Q.-Y. Xiang. ...
• Phylogenetic relationships of Coreanomecon (Papaveraceae: Chelidonioideae) inferred from seed morphology and nrITS sequence data
  Ghimire, B., Y. Suh, D. E. Soltis, and K. Heo. 2019. Phylogenetic relationships of Coreanomecon (Papaveraceae: Chelidonioideae) inferred from seed morphology and nrITS sequence data. Nordic Journal of Botany 37. ...
• Rates of niche and phenotype evolution lag behind diversification in a temperate radiation
  Folk, R. A., R. L. Stubbs, M. E. Mort, N. Cellinese, J. M. Allen, P. S. Soltis, D. E. Soltis, and R. P. Guralnick. 2019. Rates of niche and phenotype ...
• Origin of angiosperms and the puzzle of the Jurassic gap
  Li, H.-T., T.-S. Yi, L.-M. Gao, P.-F. Ma, T. Zhang, J.-B. Yang, M. A. Gitzendanner, P. W. Fritsch, J. Cai, Y. Luo, H. Wang, M. van der Bank, S.-D. Zhang, ...
• Darwin review: angiosperm phylogeny and evolutionary radiations
  Soltis Pamela S., Folk Ryan A., and Soltis Douglas E. 2019. Darwin review: angiosperm phylogeny and evolutionary radiations. Proceedings of the Royal Society B: Biological Sciences 286:20190099. [View on publisher’s ...
• Toward a large-scale and deep phenological stage annotation of herbarium specimens: Case studies from temperate, tropical, and equatorial floras
  Lorieul, T., K. D. Pearson, E. R. Ellwood, H. Goëau, J.-F. Molino, P. W. Sweeney, J. M. Yost, J. Sachs, E. Mata‐Montero, G. Nelson, P. S. Soltis, P. Bonnet, and ...
• Divergent gene expression levels between diploid and autotetraploid Tolmiea relative to the total transcriptome, the cell, and biomass.
  Visger, C. J., G. K.-S. Wong, Y. Zhang, P. S. Soltis, and D. E. Soltis. 2019. Divergent gene expression levels between diploid and autotetraploid Tolmiea relative to the total transcriptome, ...
• A chromosomal-scale genome assembly of Tectona grandis reveals the importance of tandem gene duplication and enables discovery of genes in natural product biosynthetic pathways.
  Zhao, D., J. P. Hamilton, W. W. Bhat, S. R. Johnson, G. T. Godden, T. J. Kinser, B. Boachon, N. Dudareva, D. E. Soltis, P. S. Soltis, B. Hamberger, and ...
• Plastid phylogenomic insights into the evolution of Caryophyllales
  Yao, G., J.-J. Jin, H.-T. Li, J.-B. Yang, V. Shiva Mandala, M. Croley, R. Mostow, N. A. Douglas, M. W. Chase, M. J. M. Christenhusz, D. E. Soltis, P. S. ...
• Nuclear genomes of two magnoliids
  Soltis, D. E., and P. S. Soltis. 2019. Nuclear genomes of two magnoliids. Nature Plants 5:6. Magnoliid genomes provide novel insight into early angiosperm evolution, showing how ...
• Biodiversity synthesis across the green branches of the tree of life.
  Allen, J. M., R. A. Folk, P. S. Soltis, D. E. Soltis, and R. P. Guralnick. 2019. Biodiversity synthesis across the green branches of the tree of life. Nature Plants ...

2018

• The Great Tree of Life
  Soltis, D., and P. Soltis. 2018. The Great Tree of Life. Academic Press.   The Great Tree of Life is a concise, approachable treatment that surveys the concept of the Tree of Life, ...
• Spatial phylogenetics of Florida vascular plants: The effects of calibration and uncertainty on diversity estimates
  Allen, J. M., C. C. Germain-Aubrey, N. Barve, K. M. Neubig, L. C. Majure, S. W. Laffan, B. D. Mishler, H. L. Owens, S. A. Smith, W. M. Whitten, J. ...
• Phylogenetic imprint of woody plants on the soil mycobiome in natural mountain forests of eastern China
  Yang, T., L. Tedersoo, P. S. Soltis, D. E. Soltis, J. A. Gilbert, M. Sun, Y. Shi, H. Wang, Y. Li, J. Zhang, Z. Chen, H. Lin, Y. Zhao, C. ...
• Evolutionary insights from comparative transcriptome and transcriptome-wide coalescence analyses in Tetrastigma hemsleyanum
  Wang, Y., W. Jiang, W. Ye, C. Fu, M. A. Gitzendanner, P. S. Soltis, D. E. Soltis, and Y. Qiu. 2018. Evolutionary insights from comparative transcriptome and transcriptome-wide coalescence analyses ...
• Terrestrial species adapted to sea dispersal: Differences in propagule dispersal of two Caribbean mangroves
  Hodel, R. G. J., L. L. Knowles, S. F. McDaniel, A. C. Payton, J. F. Dunaway, P. S. Soltis, and D. E. Soltis. 2018. Terrestrial species adapted to sea dispersal: ...
• Phylogeny and staminal evolution of Salvia (Lamiaceae, Nepetoideae) in East Asia
  Hu, G.-X., A. Takano, B. T. Drew, E.-D. Liu, D. E. Soltis, P. S. Soltis, H. Peng, and C.-L. Xiang. 2018. Phylogeny and staminal evolution of Salvia (Lamiaceae, Nepetoideae) in ...
• Climatic niche comparison among ploidal levels in the classic autopolyploid system, Galax urceolata
  Gaynor, M. L., D. B. Marchant, D. E. Soltis, and P. S. Soltis. 2018. Climatic niche comparison among ploidal levels in the classic autopolyploid system, Galax urceolata. American Journal of ...
• Application of CRISPR/Cas9 to Tragopogon (Asteraceae), an evolutionary model for the study of polyploidy
  Shan, S., E. V. Mavrodiev, R. Li, Z. Zhang, B. A. Hauser, P. S. Soltis, D. E. Soltis, and B. Yang. 2018. Application of CRISPR/Cas9 to Tragopogon (Asteraceae), an evolutionary ...
• Green digitization: Online botanical collections data answering real-world questions
  Soltis, P. S., G. Nelson, and S. A. James. 2018. Green digitization: Online botanical collections data answering real-world questions. Applications in Plant Sciences 6:e1028.
• Data Attribution from Download to Publication
  Soltis, P. 2018. Data Attribution from Download to Publication. Biodiversity Information Science and Standards 2:e26060. Abstract Digitized natural history data are enabling a broad range of innovative studies ...
• Herbarium data: Global biodiversity and societal botanical needs for novel research
  James, S. A., P. S. Soltis, L. Belbin, A. D. Chapman, G. Nelson, D. L. Paul, and M. Collins. 2018. Herbarium data: Global biodiversity and societal botanical needs for novel ...
• Earth BioGenome Project: Sequencing life for the future of life
  Lewin, H. A., G. E. Robinson, W. J. Kress, W. J. Baker, J. Coddington, K. A. Crandall, R. Durbin, S. V. Edwards, F. Forest, M. T. P. Gilbert, M. M. ...
• Phylogeny and staminal evolution of Salvia (Lamiaceae, Nepetoideae) in East Asia
  Hu, G.-X., A. Takano, B. T. Drew, E.-D. Liu, D. E. Soltis, P. S. Soltis, H. Peng, and C.-L. Xiang. 2018. Phylogeny and staminal evolution of Salvia (Lamiaceae, Nepetoideae) in ...
• 10KP: A phylodiverse genome sequencing plan
  Cheng, S., M. Melkonian, S. A. Smith, S. Brockington, J. M. Archibald, P.-M. Delaux, F.-W. Li, B. Melkonian, E. V. Mavrodiev, W. Sun, Y. Fu, H. Yang, D. E. Soltis, ...
• New prospects in the detection and comparative analysis of hybridization in the tree of life
  Folk, R. A., P. S. Soltis, D. E. Soltis, and R. Guralnick. 2018. New prospects in the detection and comparative analysis of hybridization in the tree of life. American Journal ...
• Character evolution and missing (morphological) data across Asteridae
  Stull, G. W., M. Schori, D. E. Soltis, and P. S. Soltis. 2018. Character evolution and missing (morphological) data across Asteridae. American Journal of Botany 105:470–479. Abstract Premise ...
• Challenges of comprehensive taxon sampling in comparative biology: Wrestling with rosids
  Folk, R. A., M. Sun, P. S. Soltis, S. A. Smith, D. E. Soltis, and R. P. Guralnick. 2018. Challenges of comprehensive taxon sampling in comparative biology: Wrestling with rosids. ...
• Using and navigating the plant tree of life
  Soltis, D. E., M. J. Moore, E. B. Sessa, S. A. Smith, and P. S. Soltis. 2018. Using and navigating the plant tree of life. American Journal of Botany 105:287–290. ...
• Impact of whole-genome duplication events on diversification rates in angiosperms
  Landis, J. B., D. E. Soltis, Z. Li, H. E. Marx, M. S. Barker, D. C. Tank, and P. S. Soltis. 2018. Impact of whole-genome duplication events on diversification rates ...
• Factors promoting polyploid persistence and diversification and limiting diploid speciation during the K–Pg interlude.
  Levin, D. A., and D. E. Soltis. 2018. Factors promoting polyploid persistence and diversification and limiting diploid speciation during the K–Pg interlude. Current Opinion in Plant Biology 42:1–7. [View on ...
• Linking genome signatures of selection and adaptation in non-model plants: exploring potential and limitations in the angiosperm Amborella
  Hodel, R. G., L. M. Chandler, A. M. Fahrenkrog, M. Kirst, M. A. Gitzendanner, D. E. Soltis, and P. S. Soltis. 2018. Linking genome signatures of selection and adaptation in ...
• Integrative identification of incipient lineages in Heuchera longiflora (Saxifragaceae)
  Folk, R. A., J. C. Ginori, D. E. Soltis, and A. J. Floden. 2018. Integrative identification of incipient lineages in Heuchera longiflora (Saxifragaceae). Bot J Linn Soc 187:327–345. [View on ...
• Molecular systematics of Caryopteris (Lamiaceae) and its allies with reference to the molecular phylogeny of subfamily Ajugoideae
  Xiang, C.-L., F. Zhao, P. D. Cantino, B. T. Drew, B. Li, E.-D. Liu, D. E. Soltis, P. S. Soltis, and H. Peng. 2018. Molecular systematics of Caryopteris (Lamiaceae) and ...
• Pseudo-parallel patterns of disjunctions in an Arctic-alpine plant lineage
  Stubbs, R. L., R. A. Folk, C.-L. Xiang, D. E. Soltis, and N. Cellinese. 2018. Pseudo-parallel patterns of disjunctions in an Arctic-alpine plant lineage. Molecular Phylogenetics and Evolution 123:88–100. [View ...
• Phylogenomic Mining of the Mints Reveals Multiple Mechanisms Contributing to the Evolution of Chemical Diversity in Lamiaceae
  Mint Evolutionary Genomics Consortium. 2018. Phylogenomic Mining of the Mints Reveals Multiple Mechanisms Contributing to the Evolution of Chemical Diversity in Lamiaceae. Molecular Plant 11:1084–1096. Abstract The evolution of ...
• Phylogeny and staminal evolution of Salvia (Lamiaceae, Nepetoideae) in East Asia
  Hu, G.-X., A. Takano, B. T. Drew, E.-D. Liu, D. E. Soltis, P. S. Soltis, H. Peng, and C.-L. Xiang. 2018. Phylogeny and staminal evolution of Salvia (Lamiaceae, Nepetoideae) in ...
• The future of cold-adapted plants in changing climates: Micranthes (Saxifragaceae) as a case study
  Stubbs, R. L., D. E. Soltis, and N. Cellinese. 2018. The future of cold-adapted plants in changing climates: Micranthes (Saxifragaceae) as a case study. Ecology and Evolution 8:7164–7177. [View on ...
• Genetic Diversity of Accessions and First Generation Progeny of the Mangaba Genebank
  Soares, A. N. R., D. Clivati, M. F. de V. Melo, M. Gitzendanner, P. Soltis, D. Soltis, J. F. da S. Júnior, A. da S. Ledo, and A. V. C. ...
• Geographic Range Dynamics Drove Ancient Hybridization in a Lineage of Angiosperms
  Folk, R. A., C. J. Visger, P. S. Soltis, D. E. Soltis, and R. P. Guralnick. 2018. Geographic Range Dynamics Drove Ancient Hybridization in a Lineage of Angiosperms. The American ...
• Evolution of floral traits and impact of reproductive mode on diversification in the phlox family (Polemoniaceae)
  Landis, J. B., C. D. Bell, M. Hernandez, R. Zenil-Ferguson, E. W. McCarthy, D. E. Soltis, and P. S. Soltis. 2018. Evolution of floral traits and impact of reproductive mode ...
• Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data
  Liu, L., Y. Wang, P. He, P. Li, J. Lee, D. E. Soltis, and C. Fu. 2018. Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and ...
• Plastome Phylogenetics: 30 Years of Inferences Into Plant Evolution
  Gitzendanner, M. A., P. S. Soltis, T.-S. Yi, D.-Z. Li, and D. E. Soltis. 2018. Chapter Ten – Plastome Phylogenetics: 30 Years of Inferences Into Plant Evolution. Pp. 293–313 in ...
• Plastid phylogenomic analysis of green plants: A billion years of evolutionary history
  Gitzendanner, M. A., P. S. Soltis, G. K.-S. Wong, B. R. Ruhfel, and D. E. Soltis. 2018. Plastid phylogenomic analysis of green plants: A billion years of evolutionary history. American ...
• Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants
  Yost, J. M., P. W. Sweeney, E. Gilbert, G. Nelson, R. Guralnick, A. S. Gallinat, E. R. Ellwood, N. Rossington, C. G. Willis, S. D. Blum, R. L. Walls, E. ...
• Herbarium data: Global biodiversity and societal botanical needs for novel research
  James, S. A., P. S. Soltis, L. Belbin, A. D. Chapman, G. Nelson, D. L. Paul, and M. Collins. n.d. Herbarium data: Global biodiversity and societal botanical needs for novel ...
• Evolutionary history of the angiosperm flora of China
  Lu, L.-M., L.-F. Mao, T. Yang, J.-F. Ye, B. Liu, H.-L. Li, M. Sun, J. T. Miller, S. Mathews, H.-H. Hu, Y.-T. Niu, D.-X. Peng, Y.-H. Chen, S. A. Smith, ...
• Phylogeny and Evolution of the Angiosperms: Revised and Updated Edition
  Soltis, D., P. Soltis, P. Endress, M. W. Chase, S. Manchester, W. Judd, L. Majure, and E. Mavrodiev. 2018. Phylogeny and Evolution of the Angiosperms: Revised and Updated Edition. University ...
• Worldwide Engagement for Digitizing Biocollections (WeDigBio): The Biocollections Community’s Citizen-Science Space on the Calendar
  Ellwood, E. R., P. Kimberly, R. Guralnick, P. Flemons, K. Love, S. Ellis, J. M. Allen, J. H. Best, R. Carter, S. Chagnoux, R. Costello, M. W. Denslow, B. A. ...

2017

• Evolutionary and domestication history of Cucurbita (pumpkin and squash) species inferred from 44 nuclear loci
  Kates, H. R., P. S. Soltis, and D. E. Soltis. 2017. Evolutionary and domestication history of Cucurbita (pumpkin and squash) species inferred from 44 nuclear loci. Molecular Phylogenetics and Evolution ...
• Cytogeography of Callisia section Cuthbertia (Commelinaceae)
  Molgo, I. E., D. E. Soltis, and P. S. Soltis. 2017. Cytogeography of Callisia section Cuthbertia (Commelinaceae). Comparative Cytogenetics 11(4):553–577. Abstract Determining the distribution of cytotypes across the ...
• Insights into the historical assembly of East Asian subtropical evergreen broadleaved forests revealed by the temporal history of the tea family
  Yu, X.-Q., L.-M. Gao, D. E. Soltis, P. S. Soltis, J.-B. Yang, L. Fang, S.-X. Yang, and D.-Z. Li. 2017. Insights into the historical assembly of East Asian subtropical evergreen ...
• Detecting alternatively spliced transcript isoforms from single-molecule long-read sequences without a reference genome
  Liu, X., W. Mei, P. S. Soltis, D. E. Soltis, and W. B. Barbazuk. 2017. Detecting alternatively spliced transcript isoforms from single-molecule long-read sequences without a reference genome. Mol Ecol ...
• Adding loci improves phylogeographic resolution in red mangroves despite increased missing data: comparing microsatellites and RAD-Seq and investigating loci filtering
  Hodel, R. G. J., S. Chen, A. C. Payton, S. F. McDaniel, P. Soltis, and D. E. Soltis. 2017. Adding loci improves phylogeographic resolution in red mangroves despite increased missing ...
• Factors promoting polyploid persistence and diversification and limiting diploid speciation during the K–Pg interlude
  Levin, D. A., and D. E. Soltis. 2018. Factors promoting polyploid persistence and diversification and limiting diploid speciation during the K–Pg interlude. Current Opinion in Plant Biology 42:1–7. [View on ...
• Karyotypic variation and pollen stainability in resynthesized allopolyploids Tragopogon miscellus and T. mirus
  Spoelhof, J. P., M. Chester, R. Rodriguez, B. Geraci, K. Heo, E. Mavrodiev, P. S. Soltis, and D. E. Soltis. 2017. Karyotypic variation and pollen stainability in resynthesized allopolyploids Tragopogon ...
• Digitization of herbaria enables novel research
  Soltis, P. S. 2017. Digitization of herbaria enables novel research. Am. J. Bot. 104:1281–1284.
• Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae)
  Landis, J. B., D. E. Soltis, and P. S. Soltis. 2017. Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae). BMC Genomics 18:475. [View on ...
• Climate change, collections and the classroom: using big data to tackle big problems
  Lacey, E. A., T. T. Hammond, R. E. Walsh, K. C. Bell, S. V. Edwards, E. R. Ellwood, R. Guralnick, S. M. Ickert-Bond, A. R. Mast, J. E. McCormack, A. ...
• Is homoploid hybrid speciation that rare? An empiricist’s view
  Nieto Feliner, G., I. Álvarez, J. Fuertes-Aguilar, M. Heuertz, I. Marques, F. Moharrek, R. Piñeiro, R. Riina, J. A. Rosselló, P. S. Soltis, and I. Villa-Machío. 2017. Is homoploid hybrid ...
• Whole-genome duplication and molecular evolution in Cornus L. (Cornaceae) – Insights from transcriptome sequences
  Yu, Y., Q. Xiang, P. S. Manos, D. E. Soltis, P. S. Soltis, B.-H. Song, S. Cheng, X. Liu, and G. Wong. 2017. Whole-genome duplication and molecular evolution in Cornus ...
• Diversification of Rosaceae since the Late Cretaceous based on plastid phylogenomics
  Zhang, S.-D., J.-J. Jin, S.-Y. Chen, M. W. Chase, D. E. Soltis, H.-T. Li, J.-B. Yang, D.-Z. Li, and T.-S. Yi. 2017. Diversification of Rosaceae since the Late Cretaceous based ...
• Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae)
  García, N., R. A. Folk, A. W. Meerow, S. Chamala, M. A. Gitzendanner, R. Souza de Oliveira, D. E. Soltis, and P. S. Soltis. n.d. Deep reticulation and incomplete lineage ...
• Detecting Alternatively Spliced Transcript Isoforms from Single-Molecule Long-Read Sequences without a Reference Genome
  Liu, X., W. Mei, P. S. Soltis, D. E. Soltis, and W. B. Barbazuk. 2017. Detecting Alternatively Spliced Transcript Isoforms from Single-Molecule Long-Read Sequences without a Reference Genome. Mol Ecol ...
• Evolutionary and domestication history of Cucurbita (pumpkin and squash) species inferred from 44 nuclear loci
  Kates, H. R., P. S. Soltis, and D. E. Soltis. 2017. Evolutionary and domestication history of Cucurbita (pumpkin and squash) species inferred from 44 nuclear loci. Molecular Phylogenetics and Evolution ...
• Evolution of floral diversity: genomics, genes and gamma
  Chanderbali, A. S., B. A. Berger, D. G. Howarth, D. E. Soltis, and P. S. Soltis. 2017. Evolution of floral diversity: genomics, genes and gamma. Phil. Trans. R. Soc. B ...
• Evolutionary Conservation of ABA Signaling for Stomatal Closure in Ferns
  Cai, S., G. Chen, Y. Wang, Y. Huang, B. Marchant, Y. Wang, Q. Yang, F. Dai, A. Hills, P. J. Franks, E. Nevo, D. Soltis, P. Soltis, E. Sessa, P. ...
• Taxonomic revision of the Opuntia humifusa complex (Opuntieae: Cactaceae) of the eastern United States
  Majure, L. C., W. S. Judd, P. S. Soltis, and D. E. Soltis. 2017. Taxonomic revision of the Opuntia humifusa complex (Opuntieae: Cactaceae) of the eastern United States. Phytotaxa 290:1–65. [View ...

2016

• Resolving the phylogenetic position of Ombrocharis (Lamiaceae), with reference to the molecular phylogeny of tribe Elsholtzieae
  Chen, Y.-P., B. T. Drew, B. Li, D. E. Soltis, P. S. Soltis, and C.-L. Xiang. 2016. Resolving the phylogenetic position of Ombrocharis (Lamiaceae), with reference to the molecular phylogeny ...
• Diversity of ABC transporter genes across the plant kingdom and their potential utility in biotechnology
  Lane, T. S., C. S. Rempe, J. Davitt, M. E. Staton, Y. Peng, D. E. Soltis, M. Melkonian, M. Deyholos, J. H. Leebens-Mack, M. Chase, C. J. Rothfels, D. Stevenson, ...
• Niche divergence between diploid and autotetraploid Tolmiea
  Visger, C. J., C. C. Germain-Aubrey, M. Patel, E. B. Sessa, P. S. Soltis, and D. E. Soltis. 2016. Niche divergence between diploid and autotetraploid Tolmiea. Am. J. Bot., doi: ...
• Floral flexibility: Diversification of the flower
  Soltis, D. E. 2016. Floral flexibility: Diversification of the flower. Nature Plants 2:15211. Angiosperm evolution involves a major transition from spiral to whorled arrangements of floral organs. ...
• Ancient WGD events as drivers of key innovations in angiosperms
  Soltis, P. S., and D. E. Soltis. 2016. Ancient WGD events as drivers of key innovations in angiosperms. Current Opinion in Plant Biology 30:159–165. Polyploidy, or whole-genome ...
• Evolving Ideas on the Origin and Evolution of Flowers: New Perspectives in the Genomic Era.
  Chanderbali, A. S., B. A. Berger, D. G. Howarth, P. S. Soltis, and D. E. Soltis. 2016. Evolving Ideas on the Origin and Evolution of Flowers: New Perspectives in the ...
• Polyploidy: Pitfalls and paths to a paradigm.
  Soltis, D. E., C. J. Visger, D. B. Marchant, and P. S. Soltis. 2016. Polyploidy: Pitfalls and paths to a paradigm. Am. J. Bot., doi: 10.3732/ajb.1500501. ABSTRACT Investigators ...
• A New Resource for the Development of SSR Markers: Millions of Loci from a Thousand Plant Transcriptomes
  Hodel, R. G. J., M. A. Gitzendanner, C. C. Germain-Aubrey, X. Liu, A. A. Crowl, M. Sun, J. B. Landis, M. C. Segovia-Salcedo, N. A. Douglas, S. Chen, D. E. ...
• The Report of My Death was an Exaggeration: A Review for Researchers Using Microsatellites in the 21st Century
  Hodel, R. G. J., M. C. Segovia-Salcedo, J. B. Landis, A. A. Crowl, M. Sun, X. Liu, M. A. Gitzendanner, N. A. Douglas, C. C. Germain-Aubrey, S. Chen, D. E. ...
• Comparative phylogeography of black mangroves (Avicennia germinans) and red mangroves (Rhizophora mangle) in Florida: Testing the maritime discontinuity in coastal plants.
  Hodel, R. G. J., M. B. de S. Cortez, P. S. Soltis, and D. E. Soltis. 2016. Comparative phylogeography of black mangroves (Avicennia germinans) and red mangroves (Rhizophora mangle) in ...
• An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV
  The Angiosperm Phylogeny Group. 2016. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV. Bot. J. Linn. Soc. 181:1–20. [View on ...
• Evolving Ideas on the Origin and Evolution of Flowers: New Perspectives in the Genomic Era
  Chanderbali, A. S., B. A. Berger, D. G. Howarth, P. S. Soltis, and D. E. Soltis. 2016. Evolving Ideas on the Origin and Evolution of Flowers: New Perspectives in the ...
• The antiquity of Cyclocarya paliurus (Juglandaceae) provides new insights into the evolution of relict plants in subtropical China since the late Early Miocene
  Kou, Y., S. Cheng, S. Tian, B. Li, D. Fan, Y. Chen, D. E. Soltis, P. S. Soltis, and Z. Zhang. 2016. The antiquity of Cyclocarya paliurus (Juglandaceae) provides new ...
• Polyploidy and the proteome
  Soltis, D. E., B. B. Misra, S. Shan, S. Chen, and P. S. Soltis. 2016. Polyploidy and the proteome. Biochimica et Biophysica Acta (BBA) – Proteins and Proteomics, doi: 10.1016/j.bbapap.2016.03.010. [View ...
• The antiquity of Cyclocarya paliurus (Juglandaceae) provides new insights into the evolution of relict plants in subtropical China since the late Early Miocene.
  Kou, Y., S. Cheng, S. Tian, B. Li, D. Fan, Y. Chen, D. E. Soltis, P. S. Soltis, and Z. Zhang. 2016. The antiquity of Cyclocarya paliurus (Juglandaceae) provides new ...
• Are Microsatellite Fragment Lengths Useful for Population-Level Studies? The Case of Polygala lewtonii (Polygalaceae)
  Germain-Aubrey, C. C., C. Nelson, D. E. Soltis, P. S. Soltis, and M. A. Gitzendanner. 2016. Are Microsatellite Fragment Lengths Useful for Population-Level Studies? The Case of Polygala lewtonii (Polygalaceae). ...
• Phylogenomic and structural analyses of 18 complete plastomes across nearly all families of early-diverging eudicots, including an angiosperm-wide analysis of IR gene content evolution
  Sun, Y., M. J. Moore, S. Zhang, P. S. Soltis, D. E. Soltis, T. Zhao, A. Meng, X. Li, J. Li, and H. Wang. 2016. Phylogenomic and structural analyses of ...
• Floral flexibility: Diversification of the flower
  Soltis, D. E. 2016. Floral flexibility: Diversification of the flower. Nature Plants 2:15211. Abstract Angiosperm evolution involves a major transition from spiral to whorled arrangements ...
• The antiquity of Cyclocarya paliurus (Juglandaceae) provides new insights into the evolution of relict plants in subtropical China since the late Early Miocene
  Kou, Y., S. Cheng, S. Tian, B. Li, D. Fan, Y. Chen, D. E. Soltis, P. S. Soltis, and Z. Zhang. 2016. The antiquity of Cyclocarya paliurus (Juglandaceae) provides new ...

2015

• Resolving basal lamiid phylogeny and the circumscription of Icacinaceae with a plastome-scale data set
  Stull, G. W., R. D. de Stefano, D. E. Soltis, and P. S. Soltis. 2015. Resolving basal lamiid phylogeny and the circumscription of Icacinaceae with a plastome-scale data set. Am. ...
• Phylogenomic and structural analyses of 18 complete plastomes across all families of early-diverging eudicots, including an angiosperm-wide analysis of IR gene content evolution.
  Sun, Y., M. J. Moore, S. Zhang, P. S. Soltis, D. E. Soltis, T. Zhao, A. Meng, X. Li, J. Li, and H. Wang. 2015. Phylogenomic and structural analyses of ...
• The phenotypic and genetic underpinnings of flower size in Polemoniaceae
  Landis, J. B., R. O’Toole, K. L. Ventura, M. A. Gitzendanner, D. G. Oppenheimer, D. E. Soltis, and P. S. Soltis. 2015. The phenotypic and genetic underpinnings of flower size ...
• Synthesis of phylogeny and taxonomy into a comprehensive tree of life
  Hinchliff, C. E., S. A. Smith, J. F. Allman, J. G. Burleigh, R. Chaudhary, L. M. Coghill, K. A. Crandall, J. Deng, B. T. Drew, R. Gazis, K. Gude, D. ...
• An Exploration into Fern Genome Space
  Wolf, P. G., E. B. Sessa, D. B. Marchant, F.-W. Li, C. J. Rothfels, E. M. Sigel, M. A. Gitzendanner, C. J. Visger, J. A. Banks, D. E. Soltis, P. ...
• Population genetic variation, geographic structure, and multiple origins of autopolyploidy in Galax urceolata
  Servick, S., C. J. Visger, M. A. Gitzendanner, P. S. Soltis, and D. E. Soltis. 2015. Population genetic variation, geographic structure, and multiple origins of autopolyploidy in Galax urceolata. Am. ...
• Nested radiations and the pulse of angiosperm diversification: increased diversification rates often follow whole genome duplications
  Tank, D. C., J. M. Eastman, M. W. Pennell, P. S. Soltis, D. E. Soltis, C. E. Hinchliff, J. W. Brown, E. B. Sessa, and L. J. Harmon. 2015. Nested ...
• Modified CTAB and TRIzol protocols improve RNA extraction from chemically complex Embryophyta
  Jordon-Thaden, I. E., A. S. Chanderbali, M. A. Gitzendanner, and D. E. Soltis. 2015. Modified CTAB and TRIzol protocols improve RNA extraction from chemically complex Embryophyta. Appl Plant Sci 3. ...
• Repeated range expansions and inter-/postglacial recolonization routes of Sargentodoxa cuneata (Oliv.) Rehd. et Wils. (Lardizabalaceae) in subtropical China revealed by chloroplast phylogeography
  Tian, S., S.-Q. Lei, W. Hu, L.-L. Deng, B. Li, Q.-L. Meng, D. E. Soltis, P. S. Soltis, D.-M. Fan, and Z.-Y. Zhang. 2015. Repeated range expansions and inter-/postglacial recolonization ...
• Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing
  Yang, Y., M. J. Moore, S. F. Brockington, D. E. Soltis, G. K.-S. Wong, E. J. Carpenter, Y. Zhang, L. Chen, Z. Yan, Y. Xie, R. F. Sage, S. Covshoff, ...
• Out of the Water: Origin and Diversification of the LBD Gene Family
  Out of the Water: Origin and Diversification of the LBD Gene Family. 2015. Chanderbali, A. S., F. He, P. S. Soltis, D. E. Soltis. Molecular Biology and Evolution. Accepted manuscript ...
• Optical Sectioning and 3D Reconstructions as an Alternative to Scanning Electron Microscopy for Analysis of Cell Shape
  Landis, J. B., K. L. Ventura, D. E. Soltis, P. S. Soltis, and D. G. Oppenheimer. 2015. Optical Sectioning and 3D Reconstructions as an Alternative to Scanning Electron Microscopy for ...
• MarkerMiner 1.0: A New Application for Phylogenetic Marker Development Using Angiosperm Transcriptomes
  Chamala, S., N. García, G. T. Godden, V. Krishnakumar, I. E. Jordon-Thaden, R. D. Smet, W. B. Barbazuk, D. E. Soltis, and P. S. Soltis. 2015. MarkerMiner 1.0: A New ...
• Multiple origins and chromosomal novelty in the allotetraploid Tragopogon castellanus (Asteraceae)
  Mavrodiev, E. V., M. Chester, V. N. Suárez-Santiago, C. J. Visger, R. Rodriguez, A. Susanna, R. M. Baldini, P. S. Soltis, and D. E. Soltis. 2015. Multiple origins and chromosomal ...
• Phylogeny, divergence times, and historical biogeography of the angiosperm family Saxifragaceae
  Deng, J., B. T. Drew, E. V. Mavrodiev, M. A. Gitzendanner, P. S. Soltis, and D. E. Soltis. 2015. Phylogeny, divergence times, and historical biogeography of the angiosperm family Saxifragaceae. ...

2014

• Phylotranscriptomic analysis of the origin and early diversification of land plants
  Wickett, N. J., S. Mirarab, N. Nguyen, T. Warnow, E. Carpenter, N. Matasci, S. Ayyampalayam, M. S. Barker, J. G. Burleigh, M. A. Gitzendanner, B. R. Ruhfel, E. Wafula, J. ...
• Data access for the 1,000 Plants (1KP) project
  Matasci, N., L.-H. Hung, Z. Yan, E. J. Carpenter, N. J. Wickett, S. Mirarab, N. Nguyen, T. Warnow, S. Ayyampalayam, M. Barker, J. G. Burleigh, M. A. Gitzendanner, E. Wafula, ...
• Between Two Fern Genomes
  Sessa, E. B., J. A. Banks, M. S. Barker, J. P. Der, A. M. Duffy, S. W. Graham, M. Hasebe, J. Langdale, F.-W. Li, D. B. Marchant, K. M. Pryer, ...
• Patterns of chromosomal variation in natural populations of the neoallotetraploid Tragopogon mirus (Asteraceae)
  Chester, M., R. K. Riley, P. S. Soltis, and D. E. Soltis. 2014. Patterns of chromosomal variation in natural populations of the neoallotetraploid Tragopogon mirus (Asteraceae). Heredity, doi: 10.1038/hdy.2014.101. [Link ...
• Nonadditive Gene Expression In Polyploids
  Yoo, M.-J., X. Liu, J. C. Pires, P. S. Soltis, and D. E. Soltis. 2014. Nonadditive Gene Expression In Polyploids. Annual Review of Genetics 48: In Press [Link to article ...
• Gene silencing via DNA methylation in naturally occurring Tragopogon miscellus (Asteraceae) allopolyploids
  Sehrish, T., V. V. Symonds, D. E. Soltis, P. S. Soltis, and J. A. Tate. 2014. Gene silencing via DNA methylation in naturally occurring Tragopogon miscellus (Asteraceae) allopolyploids. BMC Genomics ...
• Using Comparative Biogeography to Retrace the Origins of an Ecosystem: The Case of Four Plants Endemic to the Central Florida Scrub
  Germain-Aubrey, C. C., P. S. Soltis, K. M. Neubig, T. Thurston, Douglas E. Soltis, and M. A. Gitzendanner. 2014. Using Comparative Biogeography to Retrace the Origins of an Ecosystem: The ...
• Natural History Collections as Emerging Resources for Innovative Education
  Cook, J. A., S. V. Edwards, E. A. Lacey, R. P. Guralnick, P. S. Soltis, D. E. Soltis, C. K. Welch, K. C. Bell, K. E. Galbreath, C. Himes, J. ...
• Angiosperm Phylogeny Based on 18S/26S rDNA Sequence Data: Constructing a Large Data Set Using Next-Generation Sequence Data
  Maia, V. H., M. A. Gitzendanner, P. S. Soltis, Gane Ka-Shu Wong, and D. E. Soltis. 2014. Angiosperm Phylogeny Based on 18S/26S rDNA Sequence Data: Constructing a Large Data Set ...
• The polyploidy revolution then…and now: Stebbins revisited
  Soltis, D. E., C. J. Visger, and P. S. Soltis. 2014. The polyploidy revolution then…and now: Stebbins revisited. Am. J. Bot. 101:1057–1078. ABSTRACT Polyploidy has long been considered ...
• Contemporary and future studies in plant speciation, morphological/floral evolution and polyploidy: honouring the scientific contributions of Leslie D. Gottlieb to plant evolutionary biology.
  Crawford, D. J., J. J. Doyle, D. E. Soltis, P. S. Soltis, and J. F. Wendel. 2014. Contemporary and future studies in plant speciation, morphological/floral evolution and polyploidy: honouring the ...
• Polyploidy and novelty: Gottlieb’s legacy
  Soltis, P. S., X. Liu, D. B. Marchant, C. J. Visger, and D. E. Soltis. 2014. Polyploidy and novelty: Gottlieb’s legacy. Phil. Trans. R. Soc. B 369:20130351. [Link to abstract ...
• The legacy of diploid progenitors in allopolyploid gene expression patterns
  Buggs, R. J. A., J. F. Wendel, J. J. Doyle, D. E. Soltis, P. S. Soltis, and J. E. Coate. 2014. The legacy of diploid progenitors in allopolyploid gene expression ...
• Population genetic structure, genetic diversity, and natural history of the South American species of Nothofagus subgenus Lophozonia (Nothofagaceae) inferred from nuclear microsatellite data
  Vergara, R., M. A. Gitzendanner, D. E. Soltis, and P. S. Soltis. 2014. Population genetic structure, genetic diversity, and natural history of the South American species of Nothofagus subgenus Lophozonia ...
• Are polyploids really evolutionary dead-ends (again)? A critical reappraisal of Mayrose et al. (2011)
  Soltis, D. E., M. C. Segovia-Salcedo, I. Jordon-Thaden, L. Majure, N. M. Miles, E. V. Mavrodiev, W. Mei, M. Beatriz Cortez, P. S. Soltis, and M. A. Gitzendanner. 2014. Are ...
• Another Look at the Root of the Angiosperms Reveals a Familiar Tale
  Drew, B.T., Ruhfel, B.R., Smith, S.A., Moore, M.J., Briggs, B.G., Gitzendanner, M.A., Soltis, P.S., Soltis, D.E., 2014. Another Look at the Root of the Angiosperms Reveals a Familiar Tale. Syst ...
• From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes
  Ruhfel, B.R., Gitzendanner, M.A., Soltis, P.S., Soltis, D.E., Burleigh, J.G., 2014. From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes. BMC Evolutionary Biology 14, 23. ...
• Flower Fiversity and Angiosperm Diversification
  Soltis, P.S., Soltis, D.E., 2014. Flower Diversity and Angiosperm Diversification, in: Riechmann, J.L., Wellmer, F. (Eds.), Flower Development, Methods in Molecular Biology. Springer New York, pp. 85–102. [Link to article ...

2013

• The Potential of Genomics in Plant Systematics
  Soltis, Douglas E., Matthew A. Gitzendanner, Gregory Stull, Michael Chester, Andre Chanderbali, Srikar Chamala, Ingrid Jordon-Thaden, Pamela S. Soltis, Patrick S. Schnable, and W. Brad Barbazuk. 2013. “The Potential of ...
• Natural hybrids between Tragopogon mirus and T. miscellus (Asteraceae): A new perspective on karyotypic changes following hybridization at the polyploid level
  Lipman, Malorie J., Michael Chester, Pamela S. Soltis, and Douglas E. Soltis. 2013. “Natural Hybrids Between Tragopogon Mirus and T. Miscellus (Asteraceae): A New Perspective on Karyotypic Changes Following Hybridization ...
• Lost Branches on the Tree of Life
  Drew BT, Gazis R, Cabezas P, Swithers KS, Deng J, et al. (2013) Lost Branches on the Tree of Life. PLoS Biol 11(9): e1001636. doi:10.1371/journal.pbio.1001636 A new study co-authored ...